PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g007110.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 162aa    MW: 18530.4 Da    PI: 5.993
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g007110.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.000113557123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C+k+F     L  H++ H
  Csa13g007110.1 35 HQCKYCPKRFVKTQALGGHQNAH 57
                    79*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.06E-63262No hitNo description
PfamPF139123.0E-63460IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.1363562IPR007087Zinc finger, C2H2
PROSITE patternPS0002803757IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MDPIDYEMLS SDSSDVSDSS DDSSATEPLE SPKYHQCKYC PKRFVKTQAL GGHQNAHRKE  60
RELARKQNQA FQTQLEEPDL NIYVYSNWRP HSFPNQYALP PGFEEPRYNK DGRSDNLTMM  120
CNQYAGSSSS KSRNGPSNFD SPHLCLLAWY WFVVSNPYMC P*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010424772.11e-76PREDICTED: uncharacterized protein LOC104709933
TrEMBLD7LYA93e-42D7LYA9_ARALL; Zinc finger family protein
STRINGfgenesh1_pm.C_scaffold_60003669e-42(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM157411316
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05120.18e-35C2H2 family protein